Noca_3386 protein (Nocardioides sp. JS614) - STRING interaction network

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Score

Noca_3386

PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV1689 ABC transporter ATP-binding protein. (516 aa)

Predicted Functional Partners:

rplU

0.768

rplC

0.753

rpsO

0.750

rpsC

0.750

rpsD

0.746

rpsG

0.745

rpmH

0.745

rpmD

0.744

rplW

0.744

rpsJ

0.742

Your Current Organism:

Nocardioides sp. JS614

NCBI taxonomy Id: 196162
Other names: N. sp. JS614

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Noca_3386	rplC	Noca_3386	Noca_3905	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV1689 ABC transporter ATP-binding protein.	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.753
Noca_3386	rplU	Noca_3386	Noca_3451	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV1689 ABC transporter ATP-binding protein.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.768
Noca_3386	rplW	Noca_3386	Noca_3903	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV1689 ABC transporter ATP-binding protein.	LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.744
Noca_3386	rpmD	Noca_3386	Noca_3887	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV1689 ABC transporter ATP-binding protein.	PFAM: ribosomal protein L30; KEGG: pac:PPA1843 50S ribosomal protein L30.	0.744
Noca_3386	rpmH	Noca_3386	Noca_4700	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV1689 ABC transporter ATP-binding protein.	PFAM: ribosomal protein L34; KEGG: tfu:Tfu_3117 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.745
Noca_3386	rpsC	Noca_3386	Noca_3899	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV1689 ABC transporter ATP-binding protein.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.750
Noca_3386	rpsD	Noca_3386	Noca_3876	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV1689 ABC transporter ATP-binding protein.	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.746
Noca_3386	rpsG	Noca_3386	Noca_3924	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV1689 ABC transporter ATP-binding protein.	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.745
Noca_3386	rpsJ	Noca_3386	Noca_3906	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV1689 ABC transporter ATP-binding protein.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.742
Noca_3386	rpsO	Noca_3386	Noca_3178	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV1689 ABC transporter ATP-binding protein.	SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.750
rplC	Noca_3386	Noca_3905	Noca_3386	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV1689 ABC transporter ATP-binding protein.	0.753
rplC	rplU	Noca_3905	Noca_3451	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.995
rplC	rplW	Noca_3905	Noca_3903	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplC	rpmD	Noca_3905	Noca_3887	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	PFAM: ribosomal protein L30; KEGG: pac:PPA1843 50S ribosomal protein L30.	0.998
rplC	rpmH	Noca_3905	Noca_4700	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	PFAM: ribosomal protein L34; KEGG: tfu:Tfu_3117 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.974
rplC	rpsC	Noca_3905	Noca_3899	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsD	Noca_3905	Noca_3876	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.996
rplC	rpsG	Noca_3905	Noca_3924	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.997
rplC	rpsJ	Noca_3905	Noca_3906	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rplC	rpsO	Noca_3905	Noca_3178	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.995