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Noca_3386 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3386" - ABC transporter-like protein in Nocardioides sp. JS614
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3386ABC transporter-like protein (516 aa)    
Predicted Functional Partners:
rplE
50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs (198 aa)
   
      0.701
rplA
50S ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release (259 aa)
     
      0.699
rpmG
50S ribosomal protein L33 (56 aa)
     
      0.660
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA (156 aa)
   
      0.605
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP (527 aa)
   
        0.594
Noca_3385
D-3-phosphoglycerate dehydrogenase (536 aa)
   
        0.555
pheT
phenylalanyl-tRNA synthetase subunit beta (827 aa)
   
        0.534
Noca_3645
Inosine-5’-monophosphate dehydrogenase (500 aa)
   
 
  0.531
Noca_2608
Inosine 5-monophosphate dehydrogenase (478 aa)
   
 
  0.531
Noca_2989
30S ribosomal protein S1 (490 aa)
   
        0.525
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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