STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBTIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: rha:RHA1_ro02812 probable xylulokinase. (465 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase; KEGG: sma:SAV7182 putative xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
 
 
 0.994
Noca_0381
L-ribulose 5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: blo:BL0273 L-ribulose-5-phosphate 4-epimerase.
 
 
 0.951
Noca_2446
PFAM: ribulose-phosphate 3-epimerase; KEGG: sco:SCO1464 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 0.919
Noca_3396
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
  
    0.781
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.704
Noca_2607
TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: rha:RHA1_ro05490 galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.704
Noca_3398
PFAM: Aldose 1-epimerase; KEGG: tfu:Tfu_1083 putative aldose-1-epimerase.
 
  
 0.684
Noca_2541
TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: rha:RHA1_ro07186 transketolase; Belongs to the transketolase family.
  
 
 0.620
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
  
 0.592
Noca_3184
Fructose PTS system EIIBC or EIIC component; TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; KEGG: mmc:Mmcs_0080 phosphotransferase system, fructose IIC component; TC 4.A.2.1.4; TC 4.A.2.1.4; TC 4.A.2.1.4.
     
 0.579
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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