Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_3398PFAM: Aldose 1-epimerase; KEGG: tfu:Tfu_1083 putative aldose-1-epimerase. (294 aa)    
Predicted Functional Partners:
Noca_2607
TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: rha:RHA1_ro05490 galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
 0.976
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.928
Noca_2454
PFAM: Aldose 1-epimerase; KEGG: fal:FRAAL2426 putative aldose-1-epimerase.
  
  
 
0.910
Noca_0116
Polyphosphate glucokinase; PFAM: ROK family protein; KEGG: lxx:Lxx09960 glucokinase.
    
 0.907
Noca_3108
Glucokinase; PFAM: ROK family protein; KEGG: tfu:Tfu_0273 glucokinase ROK.
    
 0.907
Noca_3109
Glucokinase; TIGRFAM: putative glucokinase, ROK family; PFAM: ROK family protein; KEGG: fal:FRAAL5091 putative glucokinase (glucose kinase).
    
 0.907
Noca_4485
PFAM: ROK family protein; KEGG: blo:BL1341 possible sugar kinase.
    
 0.907
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: rha:RHA1_ro02812 probable xylulokinase.
 
  
 0.694
Noca_3396
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
       0.603
Noca_0439
TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: sma:SAV4662 D-alanyl-D-alanine carboxypeptidase.
  
  
 0.539
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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