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Noca_3416 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3416" - Berberine/berberine domain-containing protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3416Berberine/berberine domain-containing protein (202 aa)    
Predicted Functional Partners:
Noca_1767
FAD linked oxidase domain-containing protein (484 aa)
 
          0.963
Noca_3417
Asp/Glu racemase (252 aa)
   
        0.776
Noca_3020
Pyruvate kinase (487 aa)
   
  0.568
Noca_4404
Hypothetical protein (1033 aa)
   
 
  0.563
Noca_4174
FAD linked oxidase domain-containing protein (1000 aa)
   
 
  0.563
Noca_0725
FAD linked oxidase domain-containing protein (906 aa)
   
 
  0.563
Noca_4355
Succinyldiaminopimelate aminotransferase (385 aa)
   
  0.553
Noca_1193
N-succinyldiaminopimelate aminotransferase (285 aa)
   
  0.553
Noca_0295
Aspartate aminotransferase (393 aa)
   
  0.553
Noca_1233
Glyoxalase/bleomycin resistance protein/dioxygenase (253 aa)
 
   
    0.544
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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