Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3422KEGG: bcz:BCZK2308 hypothetical protein. (349 aa)    
Predicted Functional Partners:
Noca_3423
KEGG: nfa:nfa51460 hypothetical protein.
       0.535
Noca_3424
KEGG: rha:RHA1_ro02402 hypothetical protein.
       0.535
Noca_3737
KEGG: mpa:MAP3097 hypothetical protein.
  
     0.474
Noca_3709
PFAM: peptidase S15; KEGG: nph:NP4164A hypothetical protein.
  
     0.451
Noca_1879
KEGG: rha:RHA1_ro02551 hypothetical protein.
  
     0.444
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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