Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3428PFAM: NHL repeat containing protein; glucose sorbosone dehydrogenase; KEGG: rha:RHA1_ro02468 possible glucose dehydrogenase. (389 aa)    
Predicted Functional Partners:
Noca_3427
PFAM: alpha/beta hydrolase fold; KEGG: ade:Adeh_1736 alpha/beta hydrolase fold-1.
       0.779
Noca_3426
Hypothetical protein.
       0.623
Noca_3425
PFAM: protein of unknown function DUF6, transmembrane; KEGG: tfu:Tfu_1994 putative integral membrane protein.
       0.435
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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