Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3433KEGG: xac:XAC3546 outer membrane protein. (547 aa)    
Predicted Functional Partners:
Noca_3432
KEGG: syw:SYNW2303 hypothetical protein.
 
 
 0.988
Noca_3431
PFAM: cobalt transport protein; KEGG: sma:SAV5848 integral membrane protein.
 
    0.954
Noca_3430
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV5847 putative ABC transporter ATP-binding subunit.
 
  
 0.951
Noca_3429
KEGG: sco:SCO2325 integral membrane protein.
 
     0.950
Noca_0246
KEGG: sco:SCO0502 hypothetical protein.
 
    0.575
Noca_0307
TIGRFAM: CD9/CD37/CD63 antigen; KEGG: sma:SAV2527 hypothetical protein.
 
 
 0.575
Noca_2180
KEGG: sco:SCO0502 hypothetical protein.
 
    0.570
Noca_0795
KEGG: sco:SCO3177 hypothetical protein.
  
     0.565
Noca_0436
KEGG: pca:Pcar_1759 hypothetical protein.
  
     0.563
Noca_4529
PFAM: glutamine amidotransferase class-I; Anthranilate synthase component I and chorismate binding protein; KEGG: sco:SCO2117 anthranilate synthase.
 
   
 0.514
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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