STRINGSTRING
Noca_3446 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3446" - Class V aminotransferase in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3446Class V aminotransferase (399 aa)    
Predicted Functional Partners:
Noca_3143
SirA family protein (82 aa)
   
  0.994
Noca_2555
NifU family SUF system FeS assembly protein (150 aa)
   
  0.992
Noca_1474
UBA/THIF-type NAD/FAD binding protein (403 aa)
 
  0.984
mnmA
tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 (366 aa)
 
   
  0.975
Noca_3142
Cysteine desulfurase (379 aa)
   
   
 
0.933
Noca_3444
Methionine synthase, vitamin-B12 independent (338 aa)
 
        0.928
Noca_4230
Rhodanese domain-containing protein (282 aa)
   
  0.923
Noca_2918
Thiosulfate sulfurtransferase (276 aa)
   
  0.919
dnaK
Chaperone protein DnaK; Acts as a chaperone (621 aa)
 
 
  0.904
Noca_0831
Ferredoxin (106 aa)
   
  0.867
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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