Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Noca_3446PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sma:SAV2756 putative pyridoxal-phosphate-dependent aminotransferase. (399 aa)    
Predicted Functional Partners:
Noca_1474
PFAM: UBA/THIF-type NAD/FAD binding protein; Rhodanese domain protein; MoeZ/MoeB domain protein; KEGG: sma:SAV3082 molybdopterin biosynthesis protein MoeB.
 
 
 0.985
Noca_2555
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: fra:Francci3_1665 SUF system FeS assembly protein.
  
 0.981
Noca_3143
PFAM: SirA family protein; KEGG: sma:SAV6046 aminotransferase; Belongs to the sulfur carrier protein TusA family.
   
 0.977
Noca_2932
PFAM: SirA family protein; KEGG: rha:RHA1_ro11227 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
   
 0.976
Noca_4230
Thiosulfate sulfurtransferase; PFAM: Rhodanese domain protein; KEGG: mmc:Mmcs_4529 thiosulfate sulfurtransferase.
  
 0.924
Noca_3142
Cysteine desulfurase; PFAM: aminotransferase, class V; KEGG: sco:SCO2157 aminotransferase.
  
  
 
0.922
Noca_2918
Thiosulfate sulfurtransferase; PFAM: Rhodanese domain protein; KEGG: nfa:nfa10240 putative thiosulfate sulfurtransferase.
  
 0.921
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
 
  
 0.913
Noca_4419
TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rha:RHA1_ro04161 possible transcriptional regulator.
  
  
 0.809
Noca_3444
PFAM: Methionine synthase, vitamin-B12 independent; KEGG: tfu:Tfu_0602 hypothetical protein.
     
 0.806
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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