STRINGSTRING
Noca_3453 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3453" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3453Hypothetical protein (236 aa)    
Predicted Functional Partners:
Noca_3459
Radical SAM domain-containing protein (663 aa)
          0.985
Noca_3454
Hypothetical protein (396 aa)
              0.805
Noca_1736
Hypothetical protein (58 aa)
   
          0.772
Noca_3452
Ribonuclease G (1070 aa)
              0.642
Noca_3455
Major facilitator transporter (369 aa)
              0.576
Noca_3464
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape (302 aa)
 
          0.559
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (102 aa)
              0.559
rpmA
50S ribosomal protein L27 (84 aa)
              0.545
Noca_3444
Methionine synthase, vitamin-B12 independent (338 aa)
 
          0.541
Noca_3811
Vitamin B12-dependent ribonucleotide reductase (956 aa)
   
          0.528
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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