STRINGSTRING
Noca_3454 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3454" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3454Hypothetical protein (396 aa)    
Predicted Functional Partners:
Noca_3453
Hypothetical protein (236 aa)
              0.805
Noca_0106
Peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins (209 aa)
   
          0.768
Noca_3455
Major facilitator transporter (369 aa)
              0.611
Noca_2519
Hypothetical protein (100 aa)
   
          0.548
Noca_1915
Hypothetical protein (116 aa)
   
          0.472
Noca_3621
Hypothetical protein (146 aa)
   
          0.468
Noca_2941
Hypothetical protein (410 aa)
   
          0.467
Noca_0797
Nitroreductase (230 aa)
   
          0.453
Noca_3447
Integral membrane protein (200 aa)
 
          0.448
Noca_1070
DNA binding domain-containing protein (130 aa)
   
          0.442
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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