STRINGSTRING
Noca_3499 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3499" - HNH endonuclease in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3499HNH endonuclease (117 aa)    
Predicted Functional Partners:
Noca_3497
Glycosyl transferase family protein (496 aa)
 
          0.720
Noca_2758
Hypothetical protein (441 aa)
   
          0.701
Noca_2535
Hypothetical protein (321 aa)
   
          0.683
Noca_3520
Hypothetical protein (314 aa)
   
          0.630
Noca_0119
Hypothetical protein (246 aa)
   
          0.624
Noca_0300
Hypothetical protein (98 aa)
   
          0.561
Noca_3498
Hypothetical protein (240 aa)
              0.549
Noca_1741
HNH nuclease (414 aa)
   
          0.547
Noca_1463
HNH nuclease (414 aa)
   
          0.543
Noca_4159
Hypothetical protein (276 aa)
   
          0.537
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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