Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_3499PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mmc:Mmcs_2855 protein of unknown function DUF222. (117 aa)    
Predicted Functional Partners:
Noca_1741
SMART: HNH nuclease; KEGG: fal:FRAAL3997 hypothetical protein.
  
     0.684
Noca_1463
SMART: HNH nuclease; KEGG: fal:FRAAL3997 hypothetical protein.
  
     0.676
Noca_2809
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: fal:FRAAL3997 hypothetical protein.
  
     0.666
Noca_1280
SMART: HNH nuclease; KEGG: fal:FRAAL3997 hypothetical protein.
  
     0.664
Noca_2758
KEGG: mbo:Mb3101 hypothetical protein.
  
     0.520
Noca_3498
Hypothetical protein.
       0.489
Noca_2964
PFAM: HhH-GPD family protein; KEGG: mbo:Mb1187 hypothetical protein.
  
     0.488
Noca_2535
KEGG: mpa:MAP2795 hypothetical protein.
 
     0.440
Noca_3497
PFAM: glycosyl transferase, family 2; KEGG: bcl:ABC2648 hypothetical protein.
  
    0.433
Noca_0555
Hypothetical protein; KEGG: lxx:Lxx24020 phage-related terminase.
  
  
 0.407
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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