Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Noca_3519KEGG: sco:SCO4918 hypothetical protein. (135 aa)    
Predicted Functional Partners:
Noca_4689
PFAM: GCN5-related N-acetyltransferase; KEGG: fra:Francci3_4539 conserved hypothetical protein.
  
     0.753
Noca_3517
Pyridine nucleotide-disulfide oxidoreductase dimerization region; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: sma:SAV3340 dihydrolipoamide dehydrogenase.
     
 0.748
Noca_4229
PFAM: protein of unknown function DUF1416; KEGG: fra:Francci3_0450 protein of unknown function DUF1416.
  
     0.592
Noca_3518
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: pac:PPA1227 dihydrolipoamide dehydrogenase.
     
 0.566
Noca_1380
KEGG: fra:Francci3_1159 hypothetical protein.
  
     0.539
Noca_0254
PFAM: amino acid-binding ACT domain protein; KEGG: pac:PPA1121 hypothetical protein.
  
     0.515
Noca_1915
KEGG: sma:SAV5589 hypothetical protein.
  
     0.497
Noca_3945
KEGG: sma:SAV3911 hypothetical protein.
  
     0.486
Noca_4201
PFAM: helix-turn-helix domain protein; KEGG: fal:FRAAL0956 putative DNA-binding protein (partial match).
  
     0.479
Noca_2368
PFAM: sporulation and cell division protein SsgA; KEGG: fra:Francci3_1359 sporulation and cell division protein SsgA.
  
     0.468
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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