Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3520KEGG: rha:RHA1_ro05202 hypothetical protein. (314 aa)    
Predicted Functional Partners:
Noca_0436
KEGG: pca:Pcar_1759 hypothetical protein.
  
     0.598
Noca_0299
KEGG: pac:PPA2178 hypothetical protein.
  
     0.572
Noca_2834
KEGG: mmc:Mmcs_0408 putative anti-sigma regulatory factor, serine/threonine protein kinase.
  
     0.547
Noca_0927
KEGG: mpa:MAP3892 hypothetical protein.
  
     0.543
Noca_3941
PFAM: Forkhead-associated protein; KEGG: lxx:Lxx04220 hypothetical protein.
  
     0.539
Noca_3940
PFAM: RDD domain containing protein; KEGG: lxx:Lxx12090 hypothetical protein.
  
     0.529
Noca_4266
KEGG: mmc:Mmcs_0096 hypothetical protein.
  
     0.511
Noca_0344
PFAM: protein of unknown function DUF1469; KEGG: cdi:DIP0309 hypothetical protein.
  
     0.505
Noca_2647
KEGG: mpa:MAP1247 hypothetical protein.
  
     0.501
Noca_2832
Cellulose synthase (UDP-forming); PFAM: glycosyl transferase, family 2; KEGG: rha:RHA1_ro03574 probable cellulose synthase catalytic subunit.
  
     0.488
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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