STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3554TPR repeat; KEGG: ter:Tery_3075 TPR repeat. (340 aa)    
Predicted Functional Partners:
Noca_3555
KEGG: gsu:GSU0970 hypothetical protein.
 
     0.847
Noca_1705
KEGG: sma:SAV3039 hypothetical protein.
    
 0.701
Noca_3556
PFAM: 2',5' RNA ligase; KEGG: fal:FRAAL1171 putative secreted protein; putative phosphodiesterase domain.
       0.671
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.666
Noca_3558
Endoglycoceramidase; PFAM: glycoside hydrolase, family 5; KEGG: pac:PPA2106 endoglycoceramidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
     
 0.509
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
   
 0.429
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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