Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_3560PFAM: major facilitator superfamily MFS_1; KEGG: nfa:nfa9260 putative transporter. (411 aa)    
Predicted Functional Partners:
Noca_3561
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rha:RHA1_ro02614 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.588
Noca_3562
PFAM: cytochrome P450; KEGG: rha:RHA1_ro05210 cytochrome P450 CYP136.
       0.588
Noca_1918
PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: rha:RHA1_ro06437 hypothetical protein.
  
   
 0.587
Noca_3563
KEGG: rha:RHA1_ro05211 possible transcriptional regulator, TetR family.
       0.431
Noca_3881
PFAM: luciferase family protein; KEGG: mpa:MAP2513c hypothetical protein.
  
     0.405
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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