STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3561PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rha:RHA1_ro02614 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (276 aa)    
Predicted Functional Partners:
Noca_3562
PFAM: cytochrome P450; KEGG: rha:RHA1_ro05210 cytochrome P450 CYP136.
 
 
 0.881
Noca_0427
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_4362 short-chain dehydrogenase/reductase SDR.
 
 
 0.777
Noca_0689
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_3244 short-chain dehydrogenase/reductase SDR.
 
 
 0.777
Noca_2814
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: nfa:nfa5340 putative short chain dehydrogenase.
 
 
 0.777
Noca_1177
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: afu:AF1207 2-deoxy-D-gluconate 3-dehydrogenase (KduD).
 
 0.773
Noca_1849
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bam:Bamb_4144 short-chain dehydrogenase/reductase SDR.
 
 
 0.768
Noca_2742
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro04653 short chain dehydrogenase.
 
 0.751
Noca_4198
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: fal:FRAAL3120 2-deoxy-D-gluconate 3-dehydrogenase (2-keto-3-deoxygluconate oxidoreductase).
 
 0.731
Noca_3563
KEGG: rha:RHA1_ro05211 possible transcriptional regulator, TetR family.
 
     0.651
Noca_3560
PFAM: major facilitator superfamily MFS_1; KEGG: nfa:nfa9260 putative transporter.
       0.588
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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