Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Noca_3585KEGG: tfu:Tfu_2575 hypothetical protein. (422 aa)    
Predicted Functional Partners:
Noca_3586
Hypothetical protein; KEGG: sma:SAV3318 putative RNA polymerase ECF-subfamily sigma factor.
 
     0.876
purN
Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
       0.842
Noca_4682
KEGG: sco:SCO3895 hypothetical protein.
  
     0.756
Noca_4019
PFAM: metallophosphoesterase; KEGG: swo:Swol_2226 hypothetical protein.
  
     0.722
Noca_0128
KEGG: nha:Nham_2367 hypothetical protein.
  
     0.717
Noca_1794
Hypothetical protein; KEGG: tfu:Tfu_2396 putative cellulose-binding protein.
  
     0.709
Noca_3581
KEGG: tfu:Tfu_2569 putative integral membrane protein.
 
     0.691
Noca_2971
KEGG: tfu:Tfu_2217 hypothetical protein.
  
     0.672
Noca_3940
PFAM: RDD domain containing protein; KEGG: lxx:Lxx12090 hypothetical protein.
  
   
 0.669
Noca_0468
KEGG: tfu:Tfu_2874 hypothetical protein.
  
     0.668
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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