STRINGSTRING
Noca_3587 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3587" - Sigma-70 factor in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3587Sigma-70 factor (170 aa)    
Predicted Functional Partners:
Noca_3588
Hypothetical protein (318 aa)
              0.859
Noca_4685
RNA polymerase sigma factor SigM (233 aa)
   
          0.693
Noca_3654
Sigma-70 factor (172 aa)
   
          0.661
Noca_1210
RNA polymerase sigma factor SigE (230 aa)
   
          0.657
Noca_2090
Sigma-70 region 2 domain-containing protein (187 aa)
   
          0.616
Noca_0489
Sigma-70 region 2 domain-containing protein (266 aa)
   
          0.572
Noca_1706
Sigma-70 region 2 domain-containing protein (217 aa)
   
          0.557
Noca_4535
RNA polymerase sigma factor SigK (200 aa)
   
          0.509
Noca_1676
Sigma-70 region 2 domain-containing protein (174 aa)
   
          0.503
Noca_3586
Hypothetical protein (609 aa)
 
       
0.474
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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