Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
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experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_3592PFAM: peptidase M23B; KEGG: sma:SAV4118 peptidase. (321 aa)    
Predicted Functional Partners:
Noca_4676
PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: pac:PPA0126 putative penicillin-binding protein.
 
   
 0.584
Noca_0326
PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; PASTA domain containing protein; KEGG: tfu:Tfu_0109 PASTA.
 
   
 0.579
Noca_3591
isobutyryl-CoA mutase small subunit; PFAM: cobalamin B12-binding domain protein; KEGG: sco:SCO4800 isobutiryl CoA mutase, small subunit.
       0.526
Noca_3345
PFAM: peptidase M23B; KEGG: syf:Synpcc7942_0344 probable peptidase.
  
     0.519
secF
Protein translocase subunit secF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
   
 0.445
sucC
succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
  
    0.400
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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