STRINGSTRING
Noca_3608 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3608" - PspC domain-containing protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3608PspC domain-containing protein (419 aa)    
Predicted Functional Partners:
Noca_3152
PspA/IM30 family protein (260 aa)
   
 
  0.882
Noca_3609
Hypothetical protein (102 aa)
              0.859
Noca_3607
ATPase domain-containing protein (440 aa)
 
     
  0.859
Noca_3610
YbaK/prolyl-tRNA synthetase associated domain-containing protein (180 aa)
              0.787
Noca_3611
Hypothetical protein (169 aa)
              0.770
Noca_3606
Regulatory protein LuxR (229 aa)
 
     
  0.695
Noca_3613
acyl-CoA dehydrogenase domain-containing protein (382 aa)
              0.667
Noca_3612
Luciferase family protein (342 aa)
              0.667
Noca_3605
Integral membrane protein (118 aa)
              0.570
Noca_3597
Response regulator receiver (131 aa)
     
      0.536
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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