STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3722Gluconate kinase, SKI family; KEGG: mmc:Mmcs_5328 carbohydrate kinase, thermoresistant glucokinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase. (160 aa)    
Predicted Functional Partners:
Noca_0003
TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: sco:SCO3877 putative 6-phosphogluconate dehydrogenase.
  
 0.995
pgl
6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
   
 0.926
Noca_3724
KEGG: nfa:nfa6820 putative phosphodiesterase.
     
 0.786
Noca_3723
KEGG: sco:SCO0635 hypothetical protein.
       0.773
Noca_3725
Hypothetical protein.
       0.651
Noca_3721
PFAM: protein of unknown function DUF427; KEGG: sme:SMb21379 hypothetical protein.
       0.554
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
 
 
 
 0.517
Noca_3726
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mmc:Mmcs_5118 acyl-CoA dehydrogenase-like protein.
       0.463
zwf-2
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
   
 
 0.439
Noca_3727
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro01910 probable acyl CoA dehydrogenase.
       0.420
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.