STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3755KEGG: sma:SAV5466 hypothetical protein. (451 aa)    
Predicted Functional Partners:
Noca_0152
Hypothetical protein.
  
     0.704
Noca_4418
Hypothetical protein.
  
     0.677
Noca_0150
KEGG: syd:Syncc9605_2166 hypothetical protein.
  
     0.665
Noca_1448
Hypothetical protein.
  
     0.622
Noca_3586
Hypothetical protein; KEGG: sma:SAV3318 putative RNA polymerase ECF-subfamily sigma factor.
 
    0.610
Noca_1455
Hypothetical protein.
 
     0.608
Noca_1453
Hypothetical protein.
  
     0.594
Noca_0436
KEGG: pca:Pcar_1759 hypothetical protein.
  
     0.593
Noca_0128
KEGG: nha:Nham_2367 hypothetical protein.
 
   
 0.592
Noca_3754
TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: rsp:RSP_3667 transcriptional regulator, AraC family with parallel beta-helix repeat.
       0.574
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.