STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3758KEGG: sma:SAV2604 secreted protein. (911 aa)    
Predicted Functional Partners:
Noca_3759
Sodium/proton antiporter, CPA1 family; PFAM: sodium/hydrogen exchanger; KEGG: rha:RHA1_ro01570 Na+/H+ antiporter; TC 2.A.36.
       0.631
kbl
2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
       0.630
Noca_3757
L-threonine 3-dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sco:SCO6799 threonine 3-dehydrogenase.
  
    0.626
Noca_4617
Cellulase; PFAM: glycoside hydrolase, family 6; KEGG: mtu:Rv0062 cellulase / endoglucanase; Belongs to the glycosyl hydrolase family 6.
  
     0.499
Noca_3501
Cellulase; PFAM: glycoside hydrolase, family 6; KEGG: mtc:MT0067 cellulase; Belongs to the glycosyl hydrolase family 6.
  
     0.459
Noca_3760
KEGG: sma:SAV5466 hypothetical protein.
       0.457
Noca_3388
PFAM: iron permease FTR1; KEGG: sco:SCO2277 high-affinity iron transporter.
 
     0.446
Noca_1251
PFAM: Fibronectin, type III domain protein; KEGG: mbo:Mb0063 possible cellulase CelA1 (endoglucanase) (endo-1,4-beta-glucanase) (fi-cmcase) (carboxymethyl cellulase); Belongs to the glycosyl hydrolase family 6.
  
     0.416
Noca_3739
KEGG: mmc:Mmcs_4460 hypothetical protein.
  
     0.411
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.