Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_3764Hypothetical protein; KEGG: mmc:Mmcs_4669 AAA ATPase containing von Willebrand factor type A (vWA) domain-like protein. (245 aa)    
Predicted Functional Partners:
Noca_1923
PFAM: ATP-binding region, ATPase domain protein domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mtc:MT1410 sensory box protein/anti-anti-sigma factor.
   
    0.630
Noca_3765
PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV4735 RNA polymerase ECF-subfamily sigma factor.
       0.570
Noca_3766
Hypothetical protein; KEGG: hsa:93953 acidic repeat containing.
       0.570
Noca_1138
KEGG: rxy:Rxyl_2783 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
   
    0.483
Noca_0752
PFAM: flagellar hook capping protein; KEGG: bja:bll6853 hook formation protein.
   
    0.479
Noca_3763
PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpc:RPC_0376 excinuclease ABC, C subunit-like.
       0.437
Noca_1670
PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mag:amb3735 signal transduction histidine kinase.
   
    0.409
Noca_1263
PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; KEGG: sma:SAV3185 magnesium or manganese-dependent protein phosphatase.
  
    0.400
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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