STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3772TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pol:Bpro_1180 40-residue YVTN beta-propeller repeat. (406 aa)    
Predicted Functional Partners:
Noca_3135
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor; PFAM: cytochrome c, class I; KEGG: sco:SCO2150 cytochrome C heme-binding subunit.
  
 
 0.815
Noca_1954
KEGG: ade:Adeh_3151 putative lipoprotein.
 
 
 0.791
Noca_3773
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins.
 
     0.597
Noca_3784
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rxy:Rxyl_1821 cytochrome c biogenesis protein, transmembrane region.
 
   
 0.544
Noca_3785
PFAM: Redoxin domain protein; KEGG: ttj:TTHA1300 bacterioferritin comigratory protein, thiol peroxidase, putative.
 
  
 0.543
Noca_3776
PFAM: protein of unknown function DUF214; KEGG: dvu:DVUA0023 ABC transporter, permease protein, putative.
     0.539
Noca_3770
PFAM: Transketolase, central region; Transketolase domain protein; KEGG: tte:TTE0689 Thiamine pyrophosphate-dependent dehydrogenases, E1 component beta subunit.
       0.462
Noca_3771
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rsp:RSP_0964 dihydrolipoamide acetyltransferase.
       0.462
Noca_3769
Pyruvate dehydrogenase (acetyl-transferring); PFAM: dehydrogenase, E1 component; KEGG: tte:TTE0688 Thiamine pyrophosphate-dependent dehydrogenases, E1 component alpha subunit.
       0.454
Noca_1938
Periplasmic component of the Tol biopolymer transport system-like protein; KEGG: sma:SAV2712 hypothetical protein.
 
 
 
 0.451
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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