Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_3774PFAM: peptidase M23B; KEGG: sco:SCO4108 probable peptidase. (266 aa)    
Predicted Functional Partners:
Noca_3773
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins.
       0.636
Noca_0326
PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; PASTA domain containing protein; KEGG: tfu:Tfu_0109 PASTA.
 
   
 0.571
Noca_4676
PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: pac:PPA0126 putative penicillin-binding protein.
 
   
 0.561
Noca_3345
PFAM: peptidase M23B; KEGG: syf:Synpcc7942_0344 probable peptidase.
  
     0.556
secF
Protein translocase subunit secF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
   
 0.449
Noca_3772
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pol:Bpro_1180 40-residue YVTN beta-propeller repeat.
       0.445
Noca_3064
Cell division-specific peptidoglycan biosynthesis regulator FtsW; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: sma:SAV6121 putative cell division protein FtsW; Belongs to the SEDS family.
 
   
 0.421
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
 
 
 0.405
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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