STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3784PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rxy:Rxyl_1821 cytochrome c biogenesis protein, transmembrane region. (317 aa)    
Predicted Functional Partners:
Noca_3785
PFAM: Redoxin domain protein; KEGG: ttj:TTHA1300 bacterioferritin comigratory protein, thiol peroxidase, putative.
 
  
 0.956
Noca_3783
PFAM: glutaredoxin 2.
       0.821
Noca_0504
PFAM: cytochrome c assembly protein; KEGG: pac:PPA0328 putative cytochrome c biogenesis protein.
  
  
 0.691
Noca_2200
PFAM: cytochrome c assembly protein; KEGG: fra:Francci3_0513 cytochrome c assembly protein.
  
  
 0.691
Noca_0503
PFAM: ResB family protein; KEGG: sco:SCO4474 putative integral membrane protein.
  
  
 0.658
Noca_2201
PFAM: ResB family protein; KEGG: sma:SAV4800 putative cytochrome c biogenesis membrane protein.
  
  
 0.658
Noca_3782
PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro11203 response regulator, two-component system.
 
     0.610
Noca_0313
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro11204 histidine kinase.
 
     0.563
Noca_3772
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pol:Bpro_1180 40-residue YVTN beta-propeller repeat.
 
   
 0.544
Noca_1594
KEGG: sme:SMc02477 hypothetical protein.
  
   
 0.541
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.