STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3785PFAM: Redoxin domain protein; KEGG: ttj:TTHA1300 bacterioferritin comigratory protein, thiol peroxidase, putative. (207 aa)    
Predicted Functional Partners:
Noca_3784
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rxy:Rxyl_1821 cytochrome c biogenesis protein, transmembrane region.
 
  
 0.956
Noca_3783
PFAM: glutaredoxin 2.
     
 0.814
Noca_1594
KEGG: sme:SMc02477 hypothetical protein.
  
    0.581
Noca_3782
PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro11203 response regulator, two-component system.
 
   
 0.571
Noca_3772
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pol:Bpro_1180 40-residue YVTN beta-propeller repeat.
 
  
 0.543
Noca_3786
PFAM: protein of unknown function DUF156; KEGG: rha:RHA1_ro11208 hypothetical protein.
       0.532
Noca_0313
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro11204 histidine kinase.
 
  
 0.494
Noca_0143
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: nfa:nfa18780 putative thioredoxin; Belongs to the thioredoxin family.
  
 
 0.477
Noca_3781
KEGG: fra:Francci3_2227 conserved hypothetical protein.
 
     0.471
Noca_4688
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: sma:SAV4306 putative thioredoxin; Belongs to the thioredoxin family.
  
 
 0.452
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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