STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3788Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rha:RHA1_ro11213 probable copper resistance transporter, ATPase component. (785 aa)    
Predicted Functional Partners:
Noca_3787
PFAM: Heavy metal transport/detoxification protein; KEGG: rha:RHA1_ro11206 Cu(2+)-exporting ATPase.
  
 
 0.879
Noca_3747
PFAM: Heavy metal transport/detoxification protein; KEGG: nfa:nfa49020 putative metal-binding protein.
 
 
 0.693
Noca_1663
PFAM: Heavy metal transport/detoxification protein; KEGG: cgb:cg1328 putative copper chaperone.
  
 
 0.611
Noca_3786
PFAM: protein of unknown function DUF156; KEGG: rha:RHA1_ro11208 hypothetical protein.
 
  
 0.587
Noca_3789
PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: sco:SCO3040 secreted protein.
  
    0.445
Noca_0998
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ade:Adeh_0468 cation transporting P-type ATPase.
 
 
0.410
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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