Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_3790PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mpa:MAP0199 hypothetical protein. (196 aa)    
Predicted Functional Partners:
Noca_3791
Hypothetical protein.
       0.773
Noca_3789
PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: sco:SCO3040 secreted protein.
       0.648
Noca_0783
PFAM: Saccharopine dehydrogenase; KEGG: sma:SAV1683 hypothetical protein.
  
  
 0.609
Noca_4216
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ter:Tery_2252 methyltransferase type 11.
  
     0.474
Noca_2195
phosphatidyl-N-methylethanolamine N-methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rxy:Rxyl_0122 methyltransferase type 11.
  
     0.463
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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