STRINGSTRING
rsmI protein (Nocardioides sp. JS614) - STRING interaction network
"rsmI" - uroporphyrin-III C/tetrapyrrole methyltransferase in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmIuroporphyrin-III C/tetrapyrrole methyltransferase; Catalyzes the 2’-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA (280 aa)    
Predicted Functional Partners:
Noca_0496
uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase (552 aa)
       
    0.971
Noca_2600
uroporphyrinogen-III C-methyltransferase (407 aa)
       
    0.971
Noca_3409
Precorrin-3 methyltransferase / precorrin-2 C20-methyltransferase (526 aa)
       
    0.970
Noca_2892
Precorrin-3 methyltransferase / precorrin-2 C20-methyltransferase (507 aa)
       
    0.970
Noca_3143
SirA family protein (82 aa)
   
   
    0.951
Noca_2932
SirA family protein (77 aa)
         
    0.943
Noca_3858
TatD family hydrolase (275 aa)
 
     
  0.906
Noca_3859
Alpha/beta hydrolase fold protein (278 aa)
              0.859
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (297 aa)
   
   
  0.772
Noca_3861
Glycosyl transferase family protein (541 aa)
   
        0.772
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (7%) [HD]