STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3864PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO1692 oxidoreductase. (272 aa)    
Predicted Functional Partners:
Noca_3865
PFAM: aminoglycoside phosphotransferase; KEGG: nfa:nfa34090 putative phosphotransferase.
 
    0.853
Noca_3863
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: nfa:nfa34120 3-ketoacyl-(acyl-carrier-protein) reductase.
 
  
0.850
Noca_3866
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: nfa:nfa34080 putative acyl-CoA dehydrogenase.
 
    0.814
Noca_0202
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sil:SPO0595 gluconate 5-dehydrogenase.
   0.733
Noca_3380
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_5285 short-chain dehydrogenase/reductase SDR.
 
   0.717
Noca_0689
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_3244 short-chain dehydrogenase/reductase SDR.
 
   0.703
Noca_4089
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO2490 dehydrogenase (secreted protein).
 
     0.687
Noca_1846
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: dsy:DSY2660 hypothetical protein.
 
   0.685
Noca_1177
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: afu:AF1207 2-deoxy-D-gluconate 3-dehydrogenase (KduD).
 
   0.674
Noca_1847
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: dsy:DSY2660 hypothetical protein.
 
   0.668
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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