Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_3869RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO4452 RNA polymerase sigma factor. (377 aa)    
Predicted Functional Partners:
Noca_3868
PFAM: DGPFAETKE family protein; KEGG: sco:SCO4453 hypothetical protein.
 
  
 0.938
Noca_0396
PFAM: DGPFAETKE family protein; KEGG: sma:SAV1196 hypothetical protein.
 
  
 0.787
Noca_0970
PFAM: DGPFAETKE family protein; KEGG: rha:RHA1_ro00578 hypothetical protein.
 
  
 0.517
Noca_4462
PFAM: bifunctional deaminase-reductase domain protein; KEGG: cvi:CV3295 hypothetical protein.
 
     0.417
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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