STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3873Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; KEGG: nfa:nfa49100 putative transcriptional regulator. (119 aa)    
Predicted Functional Partners:
Noca_1289
PFAM: protein of unknown function DUF179; KEGG: sma:SAV5129 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
  
    0.676
Noca_4431
PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sco:SCO7307 chromosome replication initiation inhibitor protein; Belongs to the LysR transcriptional regulatory family.
   
  
 0.642
Noca_1934
Zinc uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: sma:SAV5631 putative metal uptake regulation protein; Belongs to the Fur family.
   
  
 0.629
Noca_3872
PFAM: PfkB domain protein; KEGG: rha:RHA1_ro02811 fructokinase.
       0.563
Noca_3373
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: rha:RHA1_ro05556 transcriptional regulator/aminotransferase.
 
   
 0.480
cobB
PFAM: Silent information regulator protein Sir2; KEGG: sal:Sala_2748 silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
  
    0.479
Noca_0781
PFAM: Silent information regulator protein Sir2; KEGG: nfa:nfa43380 putative Sir2 family regulator.
  
    0.479
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
     0.464
htpX
Heat shock protein, Metallo peptidase, MEROPS family M48B; PFAM: peptidase M48, Ste24p; KEGG: fra:Francci3_2230 peptidase M48, Ste24p; Belongs to the peptidase M48B family.
     
 0.463
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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