Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3908KEGG: sco:SCO3016 integral membrane protein. (207 aa)    
Predicted Functional Partners:
Noca_3911
PFAM: protein of unknown function DUF58; KEGG: sma:SAV5057 hypothetical protein.
 
  
 0.964
Noca_3909
KEGG: sco:SCO3017 secreted protein.
 
     0.956
Noca_3907
KEGG: mtc:MT3791 hypothetical protein.
 
     0.955
Noca_3910
PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: sco:SCO3018 putative regulatory protein.
 
     0.821
Noca_3912
KEGG: sco:SCO3020 integral membrane protein.
 
    0.790
Noca_3913
PFAM: RDD domain containing protein; KEGG: mpa:MAP0356c hypothetical protein.
 
    0.785
Noca_1479
PFAM: protein of unknown function DUF58; KEGG: mpa:MAP3217c hypothetical protein.
 
  
 0.428
Noca_0426
PFAM: dihydrodipicolinate reductase; KEGG: rha:RHA1_ro02530 hypothetical protein.
  
     0.420
Noca_0961
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: mpa:MAP3938c hypothetical protein.
  
     0.408
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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