Noca_3932 protein (Nocardioides sp. JS614) - STRING interaction network

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Score

Noca_3932

PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pac:PPA0477 cold shock protein. (131 aa)

Predicted Functional Partners:

Noca_3933

0.673

Noca_2500

0.648

rpsL

0.610

rplW

0.603

rpsQ

0.596

rpmC

0.572

rpsS

0.571

rpsE

0.554

rplV

0.554

rpsO

0.553

Your Current Organism:

Nocardioides sp. JS614

NCBI taxonomy Id: 196162
Other names: N. sp. JS614

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Noca_2500	Noca_3932	Noca_2500	Noca_3932	Prephenate dehydrogenase; PFAM: amino acid-binding ACT domain protein; Prephenate dehydrogenase; KEGG: lxx:Lxx05720 prephenate dehydrogenase.	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pac:PPA0477 cold shock protein.	0.648
Noca_2500	rpsE	Noca_2500	Noca_3888	Prephenate dehydrogenase; PFAM: amino acid-binding ACT domain protein; Prephenate dehydrogenase; KEGG: lxx:Lxx05720 prephenate dehydrogenase.	SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.429
Noca_3932	Noca_2500	Noca_3932	Noca_2500	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pac:PPA0477 cold shock protein.	Prephenate dehydrogenase; PFAM: amino acid-binding ACT domain protein; Prephenate dehydrogenase; KEGG: lxx:Lxx05720 prephenate dehydrogenase.	0.648
Noca_3932	Noca_3933	Noca_3932	Noca_3933	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pac:PPA0477 cold shock protein.	PFAM: ExsB family protein; Haloacid dehalogenase domain protein hydrolase; PP-loop domain protein; KEGG: ade:Adeh_1542 hypothetical protein.	0.673
Noca_3932	rplV	Noca_3932	Noca_3900	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pac:PPA0477 cold shock protein.	LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	0.554
Noca_3932	rplW	Noca_3932	Noca_3903	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pac:PPA0477 cold shock protein.	LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.603
Noca_3932	rpmC	Noca_3932	Noca_3897	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pac:PPA0477 cold shock protein.	PFAM: ribosomal protein L29; KEGG: cdi:DIP0481 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.572
Noca_3932	rpsE	Noca_3932	Noca_3888	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pac:PPA0477 cold shock protein.	SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.554
Noca_3932	rpsL	Noca_3932	Noca_3925	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pac:PPA0477 cold shock protein.	SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.	0.610
Noca_3932	rpsO	Noca_3932	Noca_3178	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pac:PPA0477 cold shock protein.	SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.553
Noca_3932	rpsQ	Noca_3932	Noca_3896	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pac:PPA0477 cold shock protein.	SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.596
Noca_3932	rpsS	Noca_3932	Noca_3901	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pac:PPA0477 cold shock protein.	SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.571
Noca_3933	Noca_3932	Noca_3933	Noca_3932	PFAM: ExsB family protein; Haloacid dehalogenase domain protein hydrolase; PP-loop domain protein; KEGG: ade:Adeh_1542 hypothetical protein.	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pac:PPA0477 cold shock protein.	0.673
rplV	Noca_3932	Noca_3900	Noca_3932	LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pac:PPA0477 cold shock protein.	0.554
rplV	rplW	Noca_3900	Noca_3903	LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplV	rpmC	Noca_3900	Noca_3897	LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	PFAM: ribosomal protein L29; KEGG: cdi:DIP0481 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.999
rplV	rpsE	Noca_3900	Noca_3888	LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.997
rplV	rpsL	Noca_3900	Noca_3925	LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.	0.996
rplV	rpsO	Noca_3900	Noca_3178	LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.987
rplV	rpsQ	Noca_3900	Noca_3896	LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.999