STRINGSTRING
Noca_3933 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3933" - Hydrolase in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3933Hydrolase (472 aa)    
Predicted Functional Partners:
Noca_0169
Circadian phase modifier CpmA (228 aa)
 
     
  0.880
Noca_0168
Hypothetical protein (393 aa)
 
          0.863
Noca_3932
Cold-shock DNA-binding protein family protein (131 aa)
              0.682
Noca_0658
Aldo/keto reductase (288 aa)
 
          0.593
Noca_2000
Hypothetical protein (526 aa)
 
          0.558
Noca_3645
Inosine-5’-monophosphate dehydrogenase (500 aa)
       
    0.532
Noca_2608
Inosine 5-monophosphate dehydrogenase (478 aa)
       
    0.532
Noca_1327
Cobalamin (vitamin B12) biosynthesis protein CbiM (229 aa)
 
          0.513
Noca_3107
LOR/SDH bifunctional protein (435 aa)
 
          0.493
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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