STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3935KEGG: mes:Meso_0710 hypothetical protein. (73 aa)    
Predicted Functional Partners:
Noca_3763
PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpc:RPC_0376 excinuclease ABC, C subunit-like.
 
  
 0.660
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.652
coaA
TIGRFAM: pantothenate kinase; KEGG: sco:SCO4738 putative pantothenate kinase.
  
     0.614
Noca_3936
KEGG: sma:SAV5466 hypothetical protein.
       0.569
Noca_2850
Palmitoyl-CoA hydrolase; PFAM: acyl-CoA thioesterase; KEGG: tfu:Tfu_0531 acyl-CoA thioesterase.
  
     0.536
Noca_2851
Palmitoyl-CoA hydrolase; PFAM: acyl-CoA thioesterase; KEGG: rha:RHA1_ro06887 acyl-CoA thioesterase II.
  
     0.524
Noca_1887
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: sco:SCO2567 integral membrane protein.
       0.511
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.