STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3940PFAM: RDD domain containing protein; KEGG: lxx:Lxx12090 hypothetical protein. (349 aa)    
Predicted Functional Partners:
Noca_1737
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase, E1 component; catalytic domain of components of various dehydrogenase complexes; Transketolase, central region; KEGG: sco:SCO5281 putative 2-oxoglutarate dehydrogenase.
   
 
 0.952
Noca_0022
PFAM: protein kinase; PASTA domain containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: tfu:Tfu_3066 tyrosine protein kinase:serine/threonine protein kinase:PASTA.
   
 
 0.845
Noca_3086
PFAM: protein kinase; PASTA domain containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: sco:SCO2110 putative eukaryotic-type serine/threonine protein kinase.
   
 
 0.845
Noca_3705
PFAM: protein of unknown function RIO1; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: lxx:Lxx00220 serine/threonine kinase.
   
 
 0.845
Noca_3941
PFAM: Forkhead-associated protein; KEGG: lxx:Lxx04220 hypothetical protein.
 
    
0.841
Noca_3942
PFAM: protein phosphatase 2C domain protein; KEGG: lxx:Lxx12030 protein phosphatase.
  
 
 0.818
Noca_3822
KEGG: mxa:MXAN_6640 hypothetical protein.
 
     0.726
Noca_3823
KEGG: mxa:MXAN_6640 hypothetical protein.
 
     0.721
Noca_1560
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: fal:FRAAL3820 putative transmembrane sensory transduction histidine kinase for metal resistance.
  
    0.692
Noca_3936
KEGG: sma:SAV5466 hypothetical protein.
 
 
   0.688
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.