STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3972PFAM: PKD domain containing protein; KEGG: sde:Sde_3982 protein of unknown function DUF37. (993 aa)    
Predicted Functional Partners:
Noca_1605
PFAM: protein of unknown function DUF214; KEGG: sco:SCO6365 putative integral membrane protein.
  
     0.758
Noca_0806
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; KEGG: ret:RHE_PC00149 putative sugar ABC transporter, substrate-binding protein; TC 3.A.1.2.-.
  
     0.724
Noca_0718
KEGG: hne:HNE_2670 putative lipoprotein.
 
     0.705
Noca_4059
KEGG: cch:Cag_1235 hypothetical protein.
  
     0.671
Noca_4057
KEGG: cch:Cag_1235 hypothetical protein.
 
  
 0.629
Noca_2941
Hypothetical protein.
  
  
 0.560
Noca_0886
TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: rpd:RPD_3003 outer membrane autotransporter barrel.
 
     0.529
Noca_0608
Transcriptional regulator, CdaR family; KEGG: rha:RHA1_ro03774 hypothetical protein.
  
     0.521
Noca_0679
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; KEGG: hso:HS_0765 ABC-type sugar-binding periplasmic protein; TC 3.A.1.2.-.
  
     0.520
Noca_0604
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; KEGG: fal:FRAAL2528 hypothetical protein; TC 3.A.1.2.-.
  
     0.510
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.