STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3973PFAM: protein of unknown function DUF182; KEGG: mmc:Mmcs_0488 protein of unknown function DUF182. (398 aa)    
Predicted Functional Partners:
Noca_3976
KEGG: rha:RHA1_ro04499 hypothetical protein.
 
  
 0.902
Noca_3974
PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor, type A; KEGG: rha:RHA1_ro04978 hypothetical protein.
 
     0.844
Noca_3970
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rha:RHA1_ro04977 carbon monoxide dehydrogenase small subunit (ferredoxin).
 
  
 0.616
Noca_1490
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rha:RHA1_ro03490 probable carbon monoxide dehydrogenase small subunit (ferredoxin).
 
  
 0.583
Noca_1489
Carbon-monoxide dehydrogenase (acceptor); PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rha:RHA1_ro03491 dehydrogenase.
 
  
 0.572
Noca_3968
Carbon monoxide dehydrogenase, medium subunit; PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rha:RHA1_ro04975 carbon monoxide dehydrogenase medium subunit.
 
  
 0.572
Noca_3969
Xanthine dehydrogenase, molybdenum binding subunit apoprotein; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rha:RHA1_ro04976 carbon monoxide dehydrogenase large subunit.
 
  
 0.572
Noca_0223
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rha:RHA1_ro05231 possible carbon monoxide dehydrogenase.
 
  
 0.569
Noca_0229
Carbon monoxide dehydrogenase, small subunit; PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rxy:Rxyl_0111 (2Fe-2S)-binding protein.
 
  
 0.563
Noca_0225
KEGG: mbo:Mb0378c hypothetical protein.
 
  
 0.558
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.