STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3979PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: rfr:Rfer_4140 C4-dicarboxylate transporter/malic acid transport protein. (352 aa)    
Predicted Functional Partners:
Noca_0316
PFAM: oxidoreductase, molybdopterin binding; KEGG: mpa:MAP2359c hypothetical protein.
 
     0.744
Noca_2637
PFAM: peptidase M50; KEGG: tfu:Tfu_1815 hypothetical protein; Belongs to the peptidase M50B family.
   
  
 0.639
Noca_3183
PFAM: PfkB domain protein; KEGG: nfa:nfa28550 putative fructose-1-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
   
    0.627
Noca_4302
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sso:SSO1764 hypothetical protein.
  
     0.572
Noca_3977
Hypothetical protein.
  
    0.537
Noca_3978
Sigma-70, region 4 type 2; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: cdi:DIP0880 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.537
Noca_1346
TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sco:SCO6535 putative nitrate reductase alpha chain NarG; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.511
Noca_1273
PFAM: amidohydrolase 2; KEGG: nfa:nfa25480 putative amidohydrolase.
 
     0.493
Noca_1349
TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: mbo:Mb1765c probable nitrate reductase NarX.
 
   
 0.457
Noca_3801
PFAM: protein of unknown function DUF1130; KEGG: rha:RHA1_ro08282 hypothetical protein.
  
     0.456
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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