STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4005PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: dra:DR0965 GMC oxidoreductase. (545 aa)    
Predicted Functional Partners:
Noca_1115
PFAM: aldehyde dehydrogenase; KEGG: mlo:mlr4198 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.916
Noca_3222
PFAM: aldehyde dehydrogenase; KEGG: rxy:Rxyl_2917 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.916
Noca_4004
PFAM: aldehyde dehydrogenase; KEGG: nfa:nfa46640 putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.810
Noca_3201
PFAM: phosphoesterase; KEGG: bam:Bamb_5381 phosphoesterase.
     
  0.800
Noca_3135
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor; PFAM: cytochrome c, class I; KEGG: sco:SCO2150 cytochrome C heme-binding subunit.
  
 
 0.794
Noca_1037
PFAM: pentapeptide repeat protein.
   
 0.776
Noca_0282
KEGG: sye:Syncc9902_0128 hypothetical protein.
  
 
 0.583
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
 
  
   0.560
Noca_4006
KEGG: rxy:Rxyl_0612 pyridoxal kinase; TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; Belongs to the pyridoxine kinase family.
       0.539
Noca_2609
TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: mmc:Mmcs_1356 choline/carnitine/betaine transport; Belongs to the BCCT transporter (TC 2.A.15) family.
  
  
 0.521
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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