Noca_4040 protein (Nocardioides sp. JS614) - STRING interaction network

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Score

Noca_4040

PFAM: transcription factor CarD; KEGG: pac:PPA0357 putative transcriptional regulator. (161 aa)

Predicted Functional Partners:

rbpA-2

0.968

rpoC

0.956

rpoZ

0.953

rpoA

0.946

rpoB

0.945

sigA

0.886

Noca_2980

0.886

Noca_1210

0.847

Noca_2278

0.792

whiB-3

0.765

Your Current Organism:

Nocardioides sp. JS614

NCBI taxonomy Id: 196162
Other names: N. sp. JS614

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Noca_1210	Noca_4040	Noca_1210	Noca_4040	RNA polymerase, sigma 29 subunit, SigE; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV3117 putative RNA polymerase ECF-subfamily sigma factor.	PFAM: transcription factor CarD; KEGG: pac:PPA0357 putative transcriptional regulator.	0.847
Noca_1210	rpoA	Noca_1210	Noca_3875	RNA polymerase, sigma 29 subunit, SigE; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV3117 putative RNA polymerase ECF-subfamily sigma factor.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.796
Noca_1210	rpoB	Noca_1210	Noca_0711	RNA polymerase, sigma 29 subunit, SigE; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV3117 putative RNA polymerase ECF-subfamily sigma factor.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.853
Noca_1210	rpoC	Noca_1210	Noca_0712	RNA polymerase, sigma 29 subunit, SigE; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV3117 putative RNA polymerase ECF-subfamily sigma factor.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.853
Noca_1210	rpoZ	Noca_1210	Noca_2437	RNA polymerase, sigma 29 subunit, SigE; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV3117 putative RNA polymerase ECF-subfamily sigma factor.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.763
Noca_2278	Noca_4040	Noca_2278	Noca_4040	PFAM: sigma-70 region 4 domain protein; KEGG: sme:SMc03873 putative RNA polymerase sigma factor protein.	PFAM: transcription factor CarD; KEGG: pac:PPA0357 putative transcriptional regulator.	0.792
Noca_2278	rbpA-2	Noca_2278	Noca_2669	PFAM: sigma-70 region 4 domain protein; KEGG: sme:SMc03873 putative RNA polymerase sigma factor protein.	Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.	0.785
Noca_2278	rpoA	Noca_2278	Noca_3875	PFAM: sigma-70 region 4 domain protein; KEGG: sme:SMc03873 putative RNA polymerase sigma factor protein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.814
Noca_2278	rpoB	Noca_2278	Noca_0711	PFAM: sigma-70 region 4 domain protein; KEGG: sme:SMc03873 putative RNA polymerase sigma factor protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.863
Noca_2278	rpoC	Noca_2278	Noca_0712	PFAM: sigma-70 region 4 domain protein; KEGG: sme:SMc03873 putative RNA polymerase sigma factor protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.830
Noca_2278	rpoZ	Noca_2278	Noca_2437	PFAM: sigma-70 region 4 domain protein; KEGG: sme:SMc03873 putative RNA polymerase sigma factor protein.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.800
Noca_2980	Noca_4040	Noca_2980	Noca_4040	Sigma-70 region 3 domain protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	PFAM: transcription factor CarD; KEGG: pac:PPA0357 putative transcriptional regulator.	0.886
Noca_2980	rbpA-2	Noca_2980	Noca_2669	Sigma-70 region 3 domain protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.	0.894
Noca_2980	rpoA	Noca_2980	Noca_3875	Sigma-70 region 3 domain protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.955
Noca_2980	rpoB	Noca_2980	Noca_0711	Sigma-70 region 3 domain protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.967
Noca_2980	rpoC	Noca_2980	Noca_0712	Sigma-70 region 3 domain protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.935
Noca_2980	rpoZ	Noca_2980	Noca_2437	Sigma-70 region 3 domain protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.898
Noca_2980	sigA	Noca_2980	Noca_2963	Sigma-70 region 3 domain protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.913
Noca_2980	whiB-3	Noca_2980	Noca_1517	Sigma-70 region 3 domain protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.	0.726
Noca_4040	Noca_1210	Noca_4040	Noca_1210	PFAM: transcription factor CarD; KEGG: pac:PPA0357 putative transcriptional regulator.	RNA polymerase, sigma 29 subunit, SigE; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV3117 putative RNA polymerase ECF-subfamily sigma factor.	0.847