Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4053Hypothetical protein. (266 aa)    
Predicted Functional Partners:
Noca_4054
Hypothetical protein.
 
     0.856
Noca_1253
PFAM: type II secretion system protein; KEGG: fal:FRAAL1320 hypothetical protein.
  
     0.763
Noca_1256
PFAM: TadE family protein; KEGG: fal:FRAAL1323 hypothetical protein.
  
     0.763
Noca_1214
KEGG: fal:FRAAL1311 hypothetical protein; putative signal peptide.
  
     0.750
Noca_1215
KEGG: fal:FRAAL1312 hypothetical protein.
  
     0.746
Noca_1255
KEGG: fra:Francci3_0782 hypothetical protein.
  
     0.742
Noca_1254
PFAM: type II secretion system protein; KEGG: fal:FRAAL1321 hypothetical protein.
  
     0.735
Noca_1213
TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; KEGG: fra:Francci3_0771 putative transcriptional regulator.
  
     0.695
Noca_1257
KEGG: fra:Francci3_0784 hypothetical protein.
  
     0.605
Noca_1443
KEGG: fra:Francci3_0770 hypothetical protein.
  
     0.564
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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