STRINGSTRING
Noca_4055 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_4055" - Aspartate racemase in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4055Aspartate racemase (229 aa)    
Predicted Functional Partners:
pyrB
Aspartate carbamoyltransferase catalytic subunit (324 aa)
       
    0.901
Noca_1631
Aspartate carbamoyltransferase (317 aa)
       
    0.901
Noca_1033
Aspartate carbamoyltransferase (291 aa)
       
    0.901
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP (432 aa)
         
  0.900
argG
Argininosuccinate synthase (477 aa)
         
    0.900
Noca_0462
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate (575 aa)
         
    0.900
panD
L-aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine (135 aa)
       
    0.802
Noca_3838
FAD dependent oxidoreductase (827 aa)
       
    0.800
Noca_2591
FAD dependent oxidoreductase (826 aa)
       
    0.800
Noca_0642
FAD dependent oxidoreductase (815 aa)
       
    0.800
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (6%) [HD]