STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4056Peptidase M4, thermolysin; Extracellular zinc metalloprotease. (430 aa)    
Predicted Functional Partners:
Noca_4057
KEGG: cch:Cag_1235 hypothetical protein.
  
 
 0.790
Noca_4058
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rha:RHA1_ro05058 hypothetical protein.
       0.485
tam
Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate.
 
     0.483
Noca_0451
PFAM: GCN5-related N-acetyltransferase.
  
     0.427
Noca_2966
TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; glycosyl transferase, family 28; Glycosyltransferase 28, C-terminal domain; KEGG: mmc:Mmcs_1269 glycosyltransferase, MGT family.
  
    0.426
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.