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Noca_4060 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_4060" - GTP-binding protein TypA in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4060GTP-binding protein TypA (631 aa)    
Predicted Functional Partners:
der
GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis (461 aa)
 
   
  0.711
Noca_4061
Fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein (476 aa)
   
 
    0.636
Noca_4059
Hypothetical protein (587 aa)
              0.633
Noca_0635
4Fe-4S ferredoxin (544 aa)
 
   
    0.631
Noca_2989
30S ribosomal protein S1 (490 aa)
   
 
  0.624
rpsI
30S ribosomal protein S9 (166 aa)
   
   
  0.608
Noca_1192
4Fe-4S ferredoxin (108 aa)
       
  0.580
Noca_4303
4Fe-4S ferredoxin (114 aa)
       
    0.579
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (147 aa)
   
   
  0.572
atpA
F0F1 ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit (547 aa)
     
   
  0.571
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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