STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4076Hypothetical protein; KEGG: ade:Adeh_0244 LigA. (719 aa)    
Predicted Functional Partners:
Noca_4068
PFAM: Endoribonuclease L-PSP; KEGG: bbr:BB1154 hypothetical protein.
  
     0.772
Noca_4069
KEGG: mpa:MAP1460 hypothetical protein.
  
     0.672
Noca_4075
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfr:Sfri_2586 flavocytochrome c.
 
     0.631
Noca_4077
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC00811 fumarate reductase flavoprotein subunit precursor.
 
     0.620
Noca_4078
Hypothetical protein.
       0.539
Noca_4079
PFAM: HpcH/HpaI aldolase; KEGG: rxy:Rxyl_0366 citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
     0.530
Noca_4065
PFAM: luciferase family protein; KEGG: mmc:Mmcs_3213 luciferase-like protein.
  
     0.511
Noca_4284
KEGG: rha:RHA1_ro04372 possible coenzyme PQQ synthesis protein.
  
     0.510
Noca_4583
PFAM: glycosyl transferase, family 2; KEGG: tfu:Tfu_1639 similar to glycosyltransferase.
  
     0.497
Noca_4070
PFAM: MaoC domain protein dehydratase; KEGG: deh:cbdb_A489 hypothetical protein.
  
     0.459
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.