STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4083PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sco:SCO2032 hypothetical protein; Belongs to the CoA-transferase III family. (398 aa)    
Predicted Functional Partners:
Noca_4085
PFAM: MmgE/PrpD family protein; KEGG: rxy:Rxyl_0368 MmgE/PrpD.
 
    0.713
Noca_4084
PFAM: cyclase family protein; KEGG: rxy:Rxyl_0367 putative cyclase.
 
    0.690
Noca_4086
PFAM: amidohydrolase; KEGG: ana:alr5010 D-hydantoinase.
 
    0.667
Noca_4081
PFAM: alpha/beta hydrolase fold; KEGG: hne:HNE_1214 hydrolase, alpha/beta fold family.
 
    0.500
Noca_4082
PFAM: extracellular solute-binding protein, family 5; KEGG: bcl:ABC1605 oligopeptide ABC transporter substrate-binding protein.
     
 0.488
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.